Publications

The technological core of QUIID initially started as a French academic research project. Since 2008, our works have been regularly published in peer-reviewed journals.They’re used as proofs of concept and show the innovation of our data mining methods to extract new knowledge from databases. Here we provide here our major publications, their editor’s link and, when copyright allows it, the pdf’s link.

 

  • [DOI] Guillaume Poezevara, Sylvain Lozano, Bertrand Cuissart, Ronan Bureau, Pierre Bureau, Vincent Croixmarie, Philippe Vayer, and Alban Lepailleur. A computational selection of metabolite biomarkers using emerging pattern mining: a case study in human hepatocellular carcinoma. Journal of proteome research, page null, 2017. PMID: 28447453
    [Bibtex]
    @article{poezevara_2017,
    author = {Poezevara, Guillaume and Lozano, Sylvain and Cuissart, Bertrand and Bureau, Ronan and Bureau, Pierre and Croixmarie, Vincent and Vayer, Philippe and Lepailleur, Alban},
    title = {A Computational Selection of Metabolite Biomarkers Using Emerging Pattern Mining: A Case Study in Human Hepatocellular Carcinoma},
    journal = {Journal of Proteome Research},
    volume = {0},
    number = {0},
    pages = {null},
    year = {2017},
    doi = {10.1021/acs.jproteome.7b00054},
    note ={PMID: 28447453},
    URL = {http://dx.doi.org/10.1021/acs.jproteome.7b00054},
    eprint = {http://dx.doi.org/10.1021/acs.jproteome.7b00054}
    }
  • [DOI] Jean-Philippe Métivier, Alban Lepailleur, Aleksey Buzmakov, Guillaume Poezevara, Bruno Crémilleux, Sergei Kuznetsov, Jérémie Le Goff, Amédéo Napoli, Ronan Bureau, and Bertrand Cuissart. Discovering structural alerts for mutagenicity using stable emerging molecular patterns. Journal of chemical information and modeling, (ja):null, 2015. PMID: 25871768
    [Bibtex]
    @article{metivier_2015,
    author = {Métivier, Jean-Philippe and Lepailleur, Alban and Buzmakov, Aleksey and Poezevara, Guillaume and Crémilleux, Bruno and Kuznetsov, Sergei and Le Goff, Jérémie and Napoli, Amédéo and Bureau, Ronan and Cuissart, Bertrand},
    title = {Discovering structural alerts for mutagenicity using stable emerging molecular patterns},
    journal = {Journal of Chemical Information and Modeling},
    volume = {0},
    number = {ja},
    pages = {null},
    year = {2015},
    doi = {10.1021/ci500611v},
    note ={PMID: 25871768},
    eprint = {http://dx.doi.org/10.1021/ci500611v}
    }
  • [PDF] [DOI] Alban Lepailleur, Guillaume Poezevara, and Ronan Bureau. Automated detection of structural alerts (chemical fragments) in (eco)toxicology. Computational and structural biotechnology journal, 5(6):1-8, 2013.
    [Bibtex]
    @article{lepailleur_2013,
    title = "Automated Detection of Structural Alerts (Chemical Fragments) in (Eco)Toxicology",
    journal = "Computational and Structural Biotechnology Journal ",
    volume = "5",
    number = "6",
    pages = "1 - 8",
    year = "2013",
    note = "",
    issn = "2001-0370",
    doi = "10.5936/csbj.201302013",
    author = "Alban Lepailleur and Guillaume Poezevara and Ronan Bureau",
    }
  • [PDF] [DOI] Bertrand Cuissart, Guillaume Poezevara, Bruno Cremilleux, Alban Lepailleur, and Ronan Bureau. , chapter Emerging Patterns as Structural Alerts for Computational Toxicology. Chapman & Hall/CRC Data Mining and Knowledge Discovery Series. Chapman and Hall/CRC, Sep 2012.
    [Bibtex]
    @Inbook{cuissart_2012,
    author="Cuissart, Bertrand and Poezevara, Guillaume and Cremilleux, Bruno and Lepailleur, Alban and Bureau, Ronan",
    chapter="Emerging Patterns as Structural Alerts for Computational Toxicology",
    series="Chapman \& Hall/CRC Data Mining and Knowledge Discovery Series",
    year="2012",
    month="Sep",
    day="14",
    publisher="Chapman and Hall/CRC",
    note="0",
    isbn="978-1-4398-5432-7",
    doi="10.1201/b12986-25",
    }
  • [PDF] Guillaume Poezevara. Fouille de graphes pour la découverte de contrastes entre classes : application à l’estimation de la toxicité des molécules. PhD thesis, 2011. 2011CAEN2079
    [Bibtex]
    @PHDTHESIS{poezevara_2011b,
    url = "http://www.theses.fr/2011CAEN2079",
    title = "Fouille de graphes pour la découverte de contrastes entre classes : application à l'estimation de la toxicité des molécules",
    author = "Poezevara, Guillaume",
    year = "2011",
    pages = "1 vol. (p.)",
    note = "Thèse de doctorat dirigée par Crémilleux, Bruno et Cuissart, Bertrand Informatique et applications Caen 2011",
    note = "2011CAEN2079"
    }
  • [PDF] [DOI] Guillaume Poezevara, Bertrand Cuissart, and Bruno Crémilleux. Extracting and summarizing the frequent emerging graph patterns from a dataset of graphs. Journal of intelligent information systems, 37(3):333-353, 2011.
    [Bibtex]
    @article{poezevara_2011a,
    year={2011},
    issn={0925-9902},
    journal={Journal of Intelligent Information Systems},
    volume={37},
    number={3},
    doi={10.1007/s10844-011-0168-1},
    title={Extracting and summarizing the frequent emerging graph patterns from a dataset of graphs},
    publisher={Springer US},
    keywords={Data mining; Emerging patterns; Condensed representation; Subgraph isomorphism; Chemical information},
    author={Poezevara, Guillaume and Cuissart, Bertrand and Crémilleux, Bruno},
    pages={333-353},
    language={English},
    }
  • [PDF] [DOI] Sylvain Lozano, Guillaume Poezevara, Marie-Pierre Halm-Lemeille, Elodie Lescot-Fontaine, Alban Lepailleur, Ryan Bissell-Siders, Bruno Crémilleux, Sylvain Rault, Bertrand Cuissart, and Ronan Bureau. Introduction of jumping fragments in combination with qsars for the assessment of classification in ecotoxicology. Journal of chemical information and modeling, 50(8):1330-1339, 2010. PMID: 20726596
    [Bibtex]
    @article{lozano_2010,
    author = {Lozano, Sylvain and Poezevara, Guillaume and Halm-Lemeille, Marie-Pierre and Lescot-Fontaine, Elodie and Lepailleur, Alban and Bissell-Siders, Ryan and Crémilleux, Bruno and Rault, Sylvain and Cuissart, Bertrand and Bureau, Ronan},
    title = {Introduction of Jumping Fragments in Combination with QSARs for the Assessment of Classification in Ecotoxicology},
    journal = {Journal of Chemical Information and Modeling},
    volume = {50},
    number = {8},
    pages = {1330-1339},
    year = {2010},
    doi = {10.1021/ci100092x},
    note ={PMID: 20726596},
    eprint = {http://dx.doi.org/10.1021/ci100092x},
    }
  • [PDF] [DOI] Guillaume Poezevara, Bertrand Cuissart, and Bruno Crémilleux. Discovering emerging graph patterns from chemicals. In Jan Rauch, ZbigniewW. Raś, Petr Berka, and Tapio Elomaa, editors, Foundations of intelligent systems, volume 5722 of Lecture Notes in Computer Science, pages 45-55. Springer Berlin Heidelberg, 2009.
    [Bibtex]
    @incollection{poezevara_2009,
    year={2009},
    isbn={978-3-642-04124-2},
    booktitle={Foundations of Intelligent Systems},
    volume={5722},
    series={Lecture Notes in Computer Science},
    editor={Rauch, Jan and Raś, ZbigniewW. and Berka, Petr and Elomaa, Tapio},
    doi={10.1007/978-3-642-04125-9_8},
    title={Discovering Emerging Graph Patterns from Chemicals},
    publisher={Springer Berlin Heidelberg},
    keywords={Data mining; emerging patterns; subgraph isomorphism; chemical information},
    author={Poezevara, Guillaume and Cuissart, Bertrand and Crémilleux, Bruno},
    pages={45-55},
    language={English},
    }